Changes in version 0.2.0 (2026-02-25) This is a major update repositioning the package from a quantitative indices calculator to a comprehensive framework for integrating Traditional Ecological Knowledge (TEK) into conservation and development decision-making. Major Changes New vignettes: - vignette("honest_ethnobotany") - Critical assessment of quantitative ethnobotany indices: what they can tell you, what they cannot tell you, when they're useful, and when they mislead. A no-holds-barred examination of both limitations and responsible use. - vignette("decision_framing_guide") - Comprehensive framework for structured decision-framing in community-based conservation. Covers decision theory, participatory ethics, epistemological foundations, multiple contrasting cases (successes and failures), and principles for defensible practice. - vignette("benin_case_study") - Critical case study of a fonio value-chain workshop in Benin. Shows what the workshop achieved, what it doesn't tell us, what follow-up is needed, and how to avoid treating a single successful event as a replicable methodology. - vignette("ethnobotanyr_decision_framing_practical") - Practical guide with worked code examples for using ethnobotanyR functions in participatory decision-framing workshops. Shows how to calculate indices responsibly and use them as prompts for dialogue rather than decision-drivers. Reframed README: - Now emphasizes three user pathways (describe knowledge, model decisions, run participatory exercises) rather than indices as the primary product - Explicitly states what the package does NOT do (make decisions, offer robust proof via indices, replace engagement) - Directs users to vignette("honest_ethnobotany") before using indices - Repositions indices as descriptive tools within larger frameworks Emphasis shift: - Moved from "indices as the main product" to "decision-framing and Bayesian modeling as primary methods" - Indices now positioned as one tool for communication and exploration, not as foundational to conservation/development decisions - Elevated Bayesian network modeling and structured decision-framing as the robust, defensible approaches What This Means Users should now: 1. Start with the framework vignettes if planning participatory work (decision-framing guide, Benin case study) 2. Read the honest critique before using indices (honest_ethnobotany vignette) 3. Use indices for disaggregation and communication, not prediction (practical guide with examples) 4. Model uncertainty when making high-stakes decisions (TEK modeling with Bayesian networks) The package now acknowledges both the utility and the substantial limitations of quantitative ethnobotany indices, and provides a path toward scientifically defensible, ethically grounded decision-making that integrates TEK. Changes in version 0.1.9.2 Enhancements - Improved the TPL function to handle infraspecific ranks more robustly. - Enhanced speed when processing large species lists. - Ultimately removed all taxonomy step sand vignettes for now Bug Fixes - Fixed an issue where the function returned an error with certain Genus-Species combinations. - Resolved a bug related to data format inconsistencies. References - Whitney, C. et al. (2018). Ethnobotany and Agrobiodiversity. Ethnobiology Letters, 9(2), 90–100. Changes in version 0.1.9.1 This version 0.1.9.1 of ethnobotanyR is a working version (thus the redundant trailing '.1'): Adding new vignettes for species names and for modeling Starting the process of dismantling the quantitative indices stuff in favor of some modeling - adding more modeling and removing - or at least scaling back argumentation about - the quantitative indices Changes in version 0.1.9 (2022-12-17) This version 0.1.9 of ethnobotanyR is a patch (Whitney 2022): Enhancements Updated for R 4.2.0 "Vigorous Calisthenics": - Added color options for ethno_alluvial() and radial_Plot() - Add error checks for use observations with more than count '1' - Add corrections for those same use observations - Added a new vignette Modeling with ethnobotanyR (split the existing into one about indices and one about modeling and expanded on both) - Add more visual output options in ggplot2 (...) - Update the non-parametric bootstrap as a Bayesian Model ethno_boot() Bug fixes - Removed pbapply options - Address issues with the gap.degree in chord plots (add a warning that more than 50 species or informants is a lot) - Remove arguments for dplyr (to work with version on the way) - Address CRAN issue https://cran.r-project.org/web/checks/check_results_isoband.html Changes in version 0.1.8 (2021-01-06) This version 0.1.8 of ethnobotanyR (Whitney 2021) is a patch: Fixed bugs in functions from Myanmar work and China work/ removed more old functions updated for new methods in the tidyverse Changes in version 0.1.7 (2020-01-30) This version 0.1.7 of ethnobotanyR (Whitney 2020c) is a patch: Added new functions from Myanmar work and China work/ removed old functions Changes in version 0.1.6 (2019-10-07) This version 0.1.6 of ethnobotanyR (Whitney 2020b) is a patch: Fixed some bugs / added some more model options and figure options Changes in version 0.1.5 (2019-08-06) This version 0.1.5 of ethnobotanyR (Whitney 2020a) is a patch: Removed some bugs / added some more model options and figure options Changes in version 0.1.4 (2019-02-13) This version 0.1.4 of ethnobotanyR is a patch: Removed some bugs and added some new methods/models and figures Changes in version 0.1.3 (2019-01-21) This version 0.1.3 of ethnobotanyR (Whitney 2019b) is a patch: Fixed some bugs and added some new indices and figures Changes in version 0.1.2 (2019-01-19) This version 0.1.2 of ethnobotanyR is a patch: Removed some bugs / added some new methods Changes in version 0.1.1 This version 0.1.1 of ethnobotanyR (Whitney 2019a) is a patch: Fixed some bugs and added some new indices Changes in version 0.1.0 (2019-01-08) This version 0.1.0 of ethnobotanyR is a new release The package ethnobotanyR 'Calculate Quantitative Ethnobotany Indices' following some common standard indices used in ethnobotany. References Whitney, C. 2022, ethnobotanyR v0.1.9, Figshare. 10.6084/m9.figshare.21780890 Whitney, C. 2021, ethnobotanyR v0.1.8, Figshare. 10.6084/m9.figshare.13554029.v2 Whitney, C. 2020c, ethnobotanyR v0.1.7, Figshare. 10.6084/m9.figshare.11791830.v3 Whitney, C. 2020b, ethnobotanyR v0.1.6, Figshare. 10.6084/m9.figshare.9948620.v2 Whitney, C. 2020a, ethnobotanyR v0.1.5, Figshare. 10.6084/m9.figshare.9956345.v3 Whitney, C. 2019b, ethnobotanyR v0.1.3, Figshare. 10.6084/m9.figshare.9956336.v1 Whitney, C. 2019a, ethnobotanyR v0.1.1, Figshare. 10.6084/m9.figshare.8050529.v3