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Context: Fonio in Benin", "1.1 The Crop and Its Significance", "1.2 Development Context", "2. The Participatory Prioritization Workshop", "2.1 Design and Participants", "2.2 Outputs: Interventions and Objectives", "Prioritized Interventions (in order of stakeholder consensus votes):", "Endorsed Objectives (what these interventions should achieve):", "3. What the Workshop Achieved: Disaggregating the Data", "3.1 Geographic Variation", "3.2 Gender Differentiation", "3.3 Stakeholder-Role Variation", "4. What the Workshop Does NOT Tell Us", "4.1 Post-Workshop Implementation: What Actually Happened?", "4.2 Representativeness of Participants", "4.3 Quality of Voting Data", "4.4 Why Did These Objectives Matter?", "5. Structural Constraints: What the Workshop Didn't Address", "5.1 Land Tenure and Access", "5.2 Credit and Capital", "5.3 Markets and Prices", "5.4 Climate Uncertainty", "5.5 Policy Environment", "6. What Went Well: Genuine Insights", "6.1 Brought Diverse Voices to the Same Table", "6.2 Made Implicit Knowledge Explicit", "6.3 Created Space for Strategic Thinking", "6.4 Produced a Concrete Priority List for Decision-Makers", "7. Lessons for Other Contexts: Transferable Principles vs. Context-Specific Details", "7.1 What Transfers (Methods & Principles)", "7.2 What Doesn't Transfer", "8. Follow-Up Questions for a Stronger Case Study", "9. Benin Within the Broader Decision-Framing Framework", "10. How to Use the Benin Case in Practice", "10.1 Use Benin as Inspiration, Not Template", "10.2 Clarify Your Own Framing Choices", "10.3 Plan for Follow-Up", "10.4 Disaggregate Data", "11. References" ], "created": "2026-02-14 11:26:31", "modified": "2026-02-14 11:26:31", "commits": 1 }, { "source": "decision_framing_guide.Rmd", "filename": "decision_framing_guide.html", "title": "Decision-Framing in Community-Based Conservation: Framework, Cases, and Critical Limitations", "author": "Cory Whitney", "engine": "knitr::rmarkdown", "headings": [ "Overview", "1. The Core Problem: Why Framing Matters", "2. Theoretical Foundations", "2.1 Decision Theory and Its Limits", "2.2 Participatory Ethics: Whose Process? Whose Framing?", "2.3 What Ethnobotany Contributes", "3. Epistemological Questions You Must Answer First", "3.1 Who Are \"the Community\"?", "3.2 Whose Decision Is It, Really?", "3.3 What Counts as a Better Decision?", "3.4 What Happens After the Workshop?", "4. When Does Decision-Framing Help? When Do They Obscure?", "4.1 Conditions Where Structured Framing Helps", "4.2 Conditions Where Decision-Framing Obscures", "5. Case Illustrations: Success, Partial Success, and Failure", "5.1 Benin: Fonio Value-Chain Framing (Partial Success)", "5.2 Parallel Case: Cocoa Agroforestry in Ghana (Partial Failure)", "5.3 Contrasting Case: Internally Driven Adaptation in Madagascar (Clearer Success)", "5.4 Case of Near-Total Failure: \"Participatory\" Conservation That Ignored Local Property Claims (Central Africa)", "6. Structural Constraints: What No Framing Can Solve", "6.1 Economic Constraints", "6.2 Institutional Constraints", "6.3 Ecological and Climate Constraints", "6.4 Political Constraints", "The Core Truth", "7. Principles for Defensible Decision-Framing in Community-Based Ethnobotany", "7.1 Be Radically Honest About What You're Doing", "7.2 Distinguish Process from Outcomes", "7.3 Check Your Assumption About Knowledge", "7.4 Leave Room for Partial Failure", "7.5 Commit to Follow-Up", "7.6 Make Power Visible", "8. When Should You NOT Conduct a Decision-Framing Exercise?", "9. Pedagogical Framework: Using Ethnobotany Data in Decisions", "9.1 Elicit TEK Systematically", "9.2 Translate TEK into Decision-Relevant Information", "9.3 Communicate Uncertainty Explicitly", "Extended Example: Ethnobotany in Benin Fonio Case", "10. Summary: Decision-Framing as Tool, Not Solution", "What decision-framing can do:", "What it cannot do:", "The ethical stance:", "11. References and Further Reading", "Appendix: Benin Case Study Details", "Interventions Prioritized (from workshop voting)", "Major Objectives Endorsed", "Key Observation from Disaggregation" ], "created": "2026-02-14 11:26:57", "modified": "2026-02-14 11:26:57", "commits": 1 }, { "source": "ethnobotanyr_decision_framing_practical.Rmd", "filename": "ethnobotanyr_decision_framing_practical.html", "title": "Using ethnobotanyR for Decision-Framing: Practical Guide with Code", "author": "Cory Whitney", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "1. Setting Up: Load Libraries and Data", "2. Generate Simulated TEK Data for Fonio", "3. Calculate Use Values (UV) and Relative Importance (RI)", "4. Visualize Knowledge Distribution", "5. Identify Areas of Agreement and Disagreement", "6. Use TEK Data in a Decision-Framing Workshop", "6.1 Present Findings Honestly", "6.2 Facilitate Reflection, Not Extraction", "7. From Knowledge to Priorities: The Explicit Step", "8. Communicate Uncertainty and Limitations", "9. Disaggregate Results for Different Audiences", "10. Integrate ethnobotanyR Quantification into a Full Workflow", "11. Summary: ethnobotanyR as a Tool in Decision-Framing", "What ethnobotanyR functions help with:", "What ethnobotanyR functions do NOT do:", "Best practice:", "12. References" ], "created": "2026-02-14 11:27:12", "modified": "2026-02-14 11:27:12", "commits": 1 }, { "source": "honest_ethnobotany.Rmd", "filename": "honest_ethnobotany.html", "title": "Honest Ethnobotany: Quantitative Indices, Their Limitations, and How to Use Them Responsibly", "author": "Cory Whitney", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "1. The Appeal: Why Indices Exist and Why They're Seductive", "1.1 The Human Impulse to Quantify", "2. The Problems: A Harsh Critique", "2.1 False Precision", "Example:", "Worse: Confidence intervals hide the problem.", "2.2 Incommensurability Collapsed into Commensurability", "2.3 What Gets Counted vs. What Matters", "2.4 Power and Access Invisible", "2.5 Assumes Stable Preferences in Unstable Times", "2.6 Almost Zero Predictive Power", "Evidence:", "3. Statistical Limitations (The Numbers Behind the Numbers)", "3.1 Confidence Intervals Are Usually Wide", "3.2 Power to Detect Differences Is Low", "3.3 Multiple Comparisons Problem", "3.4 Representativeness Is Usually Unknown", "4. Validity Questions: What Do Indices Actually Measure?", "4.1 Are You Measuring Use or Knowledge?", "4.2 Are You Measuring Frequency or Salience?", "4.3 Are You Measuring Importance or Accessibility?", "5. When Indices Are Actually Useful", "5.1 Describing Knowledge Distribution (Not Predicting Outcomes)", "5.2 Surfacing Disagreement and Variation", "5.3 Facilitating Dialogue (Not Decision-Making)", "5.4 Communicating to Non-Expert Audiences", "6. Responsible Reporting: How to Use Indices if You Use Them", "6.1 Always Report Confidence Intervals", "Example: Calculating a Bayesian Credible Interval for Use Value in R", "6.2 Disaggregate by Stakeholder Type, Gender, Age, Wealth (At Minimum)", "6.3 Report Actual Frequencies, Not Just Percentages", "6.4 Avoid Causal or Predictive Language", "6.5 Name What You Don't Know", "7. When NOT to Use Indices", "7.1 Your Sample Size Is Less Than ~15 Per Group", "7.2 You're Making High-Stakes Decisions", "7.3 You Lack Important Context", "7.4 Different Interpretations of What's Being Cited", "8. The Paradox: Why ethnobotanyR Exists, and Why It's Critical", "8.1 The Attraction", "8.2 The Danger", "8.3 Our Responsibility", "9. Forward: What Robust Ethnobotanical Research Looks Like", "9.1 Quantify, but With Caveats", "9.2 Triangulate: Connect Knowledge to Actual Practice", "9.3 Model Under Uncertainty: Use Bayesian Methods", "9.4 Frame Decisions Explicitly", "9.5 Follow Up: Document Implementation and Outcomes", "10. Summary: The Principles", "11. References" ], "created": "2026-02-14 11:27:25", "modified": "2026-02-23 11:52:32", "commits": 4 }, { "source": "ethnobotanyR_modeling_vignette.Rmd", "filename": "ethnobotanyR_modeling_vignette.html", "title": "Modeling with ethnobotanyR", "author": "Cory Whitney", "engine": "knitr::rmarkdown", "headings": [ "ethnobotanyR modeling functions", "The non-parametric Bayesian bootstrap", "Richer response data", "References" ], "created": "2022-02-07 16:22:52", "modified": "2026-02-24 17:17:41", "commits": 10 }, { "source": "ethnobotanyr_vignette.Rmd", "filename": "ethnobotanyr_vignette.html", "title": "Quantitative ethnobotany analysis with ethnobotanyR", "author": "Cory Whitney, University of Bonn", "engine": "knitr::rmarkdown", "headings": [ "A Critical Perspective on Ethnobotany Indices", "using the ethnobotanyR package", "Working with figures", "Chord diagrams with circlize", "Flow diagrams with ggalluvial", "ethnobotanyR indices functions", "Use Report (UR) per species", "Cultural Importance (CI) index", "Frequency of Citation (FC) per species", "Number of Uses (NU) per species", "Relative Frequency of Citation (RFC) index", "Relative Importance (RI) index", "Use Value (UV) index", "Cultural Value (CVe) for ethnospecies", "Fidelity Level (FL) per species", "Plot all indices", "Exploratory analyses", "Ordination methods", "Detrended correspondence analysis (DCA)", "Principal component analysis (PCA)", "Conclusions", "Acknowledgements", "References" ], "created": "2019-01-09 22:46:00", "modified": "2025-10-14 09:37:17", "commits": 57 }, { "source": "TEK_modeling_vignette.Rmd", "filename": "TEK_modeling_vignette.html", "title": "Modeling with Traditional Ecological Knowledge (TEK): Bayesian Networks and Monte Carlo", "author": "Cory Whitney", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Required packages", "1. 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